An upgrade is not supported. Apply the captured config to the target profile and deploy the applications. For each profile you want to migrate, you use waspreupgrade to create a backup of your old configuration in a separate location, and waspostupgrade to merge that configuration with a new profile in the new configuration.
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Currently running websphere 8.5.5.13 looking to upgrade to websphere 9.0.0.6 as i understand it, it's a new install, plus migration, rather than fixpack upgrades such as 8.5.5.12 to 8.5.5.13
Install was in a new folder location and migrate
How is this best accomplished? Steps to migrate your ibm websphere application server v7.0, v8.0, or v8.5.5 product and profiles to ibm websphere application server v9.0 Some of the information in the following steps was taken from the ibm websphere application server v9.0 documentation. From there, you can migrate your profiles over using waspreupgrade and waspostupgrade
I use the steps here Migrating a cell using the command line tools Ibm provides a collection of articles that talk about the basics of migrating applications to liberty These pages include links to tools meant to scan the environment and identify the changes needed to make applications compatible with liberty and produce sample server configuration.
The migration process can be divided into three steps
Capture the applications and the associated config Create a target profile in the new websphere release